Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| HNSC | rs79419570 | chr1:36210279 | G/A | 6.28E-14 | 513 | 21.27 | 32.67 | 3.02 | KM Plot |
| HNSC | rs79674501 | chr1:36270589 | G/A | 9.73E-14 | 512 | 21.3 | 27.43 | 3.02 | KM Plot |
| HNSC | rs798083 | chr15:31125348 | T/C | 3.23E-6 | 513 | 22.9 | 19.9 | 10.6 | KM Plot |
| HNSC | rs798085 | chr15:31127840 | G/A | 3.06E-6 | 514 | 22.87 | 19.9 | 10.6 | KM Plot |
| HNSC | rs798121 | chr15:31115555 | A/G | 5.62E-8 | 515 | 23 | 19.9 | 9.43 | KM Plot |
| HNSC | rs798122 | chr15:31115578 | T/C | 3.97E-6 | 513 | 22.87 | 20 | 10.6 | KM Plot |
| HNSC | rs798123 | chr15:31115853 | G/T | 3.97E-6 | 513 | 22.87 | 20 | 10.6 | KM Plot |
| HNSC | rs798124 | chr15:31116542 | C/T | 3.97E-6 | 513 | 22.87 | 20 | 10.6 | KM Plot |
| HNSC | rs798126 | chr15:31117210 | G/A | 3.97E-6 | 513 | 22.87 | 20 | 10.6 | KM Plot |
| HNSC | rs798128 | chr15:31118207 | C/T | 3.97E-6 | 513 | 22.87 | 20 | 10.6 | KM Plot |
| HNSC | rs79874017 | chr1:53570642 | G/A | 1.95E-6 | 511 | 22.2 | 16.17 | 4.2 | KM Plot |
| HNSC | rs79913394 | chr21:48088571 | A/G | 5.16E-9 | 511 | 21.52 | 21.02 | 2.73 | KM Plot |
| HNSC | rs7998948 | chr13:20373628 | T/C | 4.43E-5 | 514 | 26.3 | 16.23 | 22.82 | KM Plot |
| HNSC | rs8000172 | chr13:20374851 | C/T | 5.03E-5 | 514 | 26.3 | 16.23 | 22.82 | KM Plot |
| HNSC | rs80040267 | chr21:48057324 | T/G | 5.69E-9 | 510 | 21.65 | 20.2 | 2.73 | KM Plot |